Tohoku University Tohoku Medical Megabank Organization (Soichi Ogishima)
2019.09.13

1.   Sakurai-Yageta Mika, Kawame Hiroshi, Kuriyama Shinichi, et al. A training and education program for genome medical research coordinators in the genome cohort study of the Tohoku Medical Megabank Organization. BMC Medical Education. 2019; 19 (1): 297. doi:10.1186/s12909-019-1725-5  
2.   Sugawara Junichi, Ochi Daisuke, Yamashita Riu, et al. Maternity Log study: a longitudinal lifelog monitoring and multiomics analysis for the early prediction of complicated pregnancy. BMJ Open. 2019; 9 (2): bmjopen-2018-025939. doi:10.1136/bmjopen-2018-025939  
3.   Kuriyama Shinichi, Metoki Hirohito, Kikuya Masahiro, et al. Cohort Profile: Tohoku Medical Megabank Project Birth and Three-Generation Cohort Study (TMM BirThree Cohort Study): Rationale, Progress and Perspective. International Journal of Epidemiology. 2019; : . doi:10.1093/ije/dyz169  
4.   Shido Kosuke, Kojima Kaname, Yamasaki Kenshi, et al. Susceptibility Loci for Tanning Ability in the Japanese Population Identified by a Genome-Wide Association Study from the Tohoku Medical Megabank Project Cohort Study. Journal of Investigative Dermatology. 2019; 139 (7): 1605-1608.e13. doi:10.1016/j.jid.2019.01.015  
5.   Tanikawa Chizu, Kamatani Yoichiro, Terao Chikashi, et al. Novel Risk Loci Identified in a Genome-Wide Association Study of Urolithiasis in a Japanese Population. Journal of the American Society of Nephrology : JASN. 2019; 30 (5): 855-864. doi:10.1681/ASN.2018090942  
6.   Yasuda Jun, Kinoshita Kengo, Katsuoka Fumiki, et al. Genome analyses for the Tohoku Medical Megabank Project towards establishment of personalized healthcare. The Journal of Biochemistry. 2019; 165 (2): 139-158. doi:10.1093/jb/mvy096  
7.   Minegishi Naoko, Nishijima Ichiko, Nobukuni Takahiro, et al. Biobank Establishment and Sample Management in the Tohoku Medical Megabank Project. The Tohoku journal of experimental medicine. 2019; 248 (1): 45-55. doi:10.1620/tjem.248.45  
8.   Kogetsu Atsushi, Ogishima Soichi, Kato Kazuto. Authentication of Patients and Participants in Health Information Exchange and Consent for Medical Research: A Key Step for Privacy Protection, Respect for Autonomy, and Trustworthiness. Frontiers in genetics. 2018; 9 : 167. doi:10.3389/fgene.2018.00167  
9.   Ogishima Soichi. [Human Genome Data and Drug Development]. Gan to kagaku ryoho. Cancer & chemotherapy. 2018; 45 (4): 597-600. http://www.ncbi.nlm.nih.gov/pubmed/29650811  
10.   Koshiba Seizo, Motoike Ikuko, Saigusa Daisuke, et al. Omics research project on prospective cohort studies from the Tohoku Medical Megabank Project. Genes to Cells. 2018; 23 (6): 406-417. doi:10.1111/gtc.12588  
11.   Yamaguchi-Kabata Yumi, Yasuda Jun, Tanabe Osamu, et al. Evaluation of reported pathogenic variants and their frequencies in a Japanese population based on a whole-genome reference panel of 2049 individuals. Journal of Human Genetics. 2018; 63 (2): 213-230. doi:10.1038/s10038-017-0347-1  
12.   Takai-Igarashi Takako, Kinoshita Kengo, Nagasaki Masao, et al. Security controls in an integrated Biobank to protect privacy in data sharing: rationale and study design. BMC Medical Informatics and Decision Making. 2017; 17 (1): 100. doi:10.1186/s12911-017-0494-5  
13.   Shido K., Kojima K., Hozawa A., et al. 503 Genome-wide association study identifies novel susceptibility loci for tanning ability in Japanese population. Journal of Investigative Dermatology. 2017; 137 (5): S86. doi:10.1016/j.jid.2017.02.523  
14.   Low Siew-Kee, Takahashi Atsushi, Ebana Yusuke, et al. Identification of six new genetic loci associated with atrial fibrillation in the Japanese population. Nature genetics. 2017; 49 (6): 953-958. doi:10.1038/ng.3842  
15.   Köhler Sebastian, Vasilevsky Nicole A, Engelstad Mark, et al. The Human Phenotype Ontology in 2017. Nucleic acids research. 2017; 45 (D1): D865-D876. doi:10.1093/nar/gkw1039  
16.   Noguchi Shuhei, Arakawa Takahiro, Fukuda Shiro, et al. FANTOM5 CAGE profiles of human and mouse samples. Scientific Data. 2017; 4 : 170112. doi:10.1038/sdata.2017.112  
17.   Kuriyama Shinichi, Yaegashi Nobuo, Nagami Fuji, et al. The Tohoku Medical Megabank Project: Design and Mission. Journal of Epidemiology. 2016; 26 (9): 493-511. doi:10.2188/jea.JE20150268  
18.   Ogishima Soichi, Mizuno Satoshi, Kikuchi Masataka, et al. AlzPathway, an Updated Map of Curated Signaling Pathways: Towards Deciphering Alzheimer’s Disease Pathogenesis. Methods in molecular biology (Clifton, N.J.). 2016; 1303 : 423-432. doi:10.1007/978-1-4939-2627-5_25  
19.   Kikuchi Masataka, Ogishima Soichi, Mizuno Satoshi, et al. Network-Based Analysis for Uncovering Mechanisms Underlying Alzheimer’s Disease. Methods in molecular biology (Clifton, N.J.). 2016; 1303 : 479-491. doi:10.1007/978-1-4939-2627-5_29  
20.   Mizuno Satoshi, Ogishima Soichi, Kitatani Kazuyuki, et al. Network Analysis of a Comprehensive Knowledge Repository Reveals a Dual Role for Ceramide in Alzheimer's Disease. PloS one. 2016; 11 (2): e0148431. doi:10.1371/journal.pone.0148431  
21.   Mizuno Satoshi, Ogishima Soichi, Nishigori Hidekazu, et al. The Pre-Eclampsia Ontology: A Disease Ontology Representing the Domain Knowledge Specific to Pre-Eclampsia. PLOS ONE. 2016; 11 (10): e0162828. doi:10.1371/journal.pone.0162828  
22.   Koshiba Seizo, Motoike Ikuko, Kojima Kaname, et al. The structural origin of metabolic quantitative diversity. Scientific Reports. 2016; 6 (1): 31463. doi:10.1038/srep31463  
23.   Nagaie Satoshi, Ogishima Soichi, Nakaya Jun, Tanaka Hiroshi. A method to associate all possible combinations of genetic and environmental factors using GxE landscape plot. Bioinformation. 2015; 11 (3): 161-4. doi:10.6026/97320630011161  
24.   Ogishima Soichi, Tanaka Hiroshi, Nakaya Jun. Modularity in the evolution of yeast protein interaction network. Bioinformation. 2015; 11 (3): 127-30. doi:10.6026/97320630011127  
25.   Aoki-Kinoshita Kiyoko F, Kinjo Akira R, Morita Mizuki, et al. Implementation of linked data in the life sciences at BioHackathon 2011. Journal of biomedical semantics. 2015; 6 (1): 3. doi:10.1186/2041-1480-6-3  
26.   Tanaka Hiroshi, Ogishima Soichi. Network biology approach to epithelial-mesenchymal transition in cancer metastasis: three stage theory. Journal of molecular cell biology. 2015; 7 (3): 253-66. doi:10.1093/jmcb/mjv035  
27.   Nagasaki Masao, Yasuda Jun, Katsuoka Fumiki, et al. Rare variant discovery by deep whole-genome sequencing of 1,070 Japanese individuals. Nature communications. 2015; 6 : 8018. doi:10.1038/ncomms9018  
28.   Arner E., Daub C. O., Vitting-Seerup K., et al. Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells. Science. 2015; 347 (6225): 1010-1014. doi:10.1126/science.1259418  
29.   Ogishima Soichi, Takai Takako, Shimokawa Kazuro, et al. Integrated Database And Knowledge Base For Genomic Prospective Cohort Study In Tohoku Medical Megabank Toward Personalized Prevention And Medicine. Studies in health technology and informatics. 2015; 216 : 1057. doi:10.3233/978-1-61499-564-7-1057  
30.   Katayama Toshiaki, Wilkinson Mark D, Aoki-Kinoshita Kiyoko F, et al. BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains. Journal of biomedical semantics. 2014; 5 (1): 5. doi:10.1186/2041-1480-5-5  
31.   FANTOM Consortium and the RIKEN PMI and CLST (DGT) The FANTOM Consortium and the RIKEN PMI and CLST, Forrest Alistair R R, Kawaji Hideya, et al. A promoter-level mammalian expression atlas. Nature. 2014; 507 (7493): 462-70. doi:10.1038/nature13182  
32.   Miyashita A, Hatsuta H, Kikuchi M, et al. Genes associated with the progression of neurofibrillary tangles in Alzheimer's disease. Translational psychiatry. 2014; 4 (6): e396. doi:10.1038/tp.2014.35  
33.   Nakaya J., Kimura M., Ogishima S., et al. Future Direction of IMIA Standardization. Report from the IMIA Standardization Working Group. Yearbook of medical informatics. 2014; 9 (1): 105-9. doi:10.15265/IY-2014-0010  
34.   Nishio Yousuke, Ogishima Soichi, Ichikawa Masao, et al. Analysis of L-glutamic acid fermentation by using a dynamic metabolic simulation model of Escherichia coli. BMC systems biology. 2013; 7 (1): 92. doi:10.1186/1752-0509-7-92  
35.   Ogishima S, Mizuno S, Kikuchi M, et al. A map of Alzheimer's disease-signaling pathways: a hope for drug target discovery. Clinical pharmacology and therapeutics. 2013; 93 (5): 399-401. doi:10.1038/clpt.2013.37  
36.   Kikuchi Masataka, Ogishima Soichi, Miyamoto Tadashi, et al. Identification of unstable network modules reveals disease modules associated with the progression of Alzheimer's disease. PloS one. 2013; 8 (11): e76162. doi:10.1371/journal.pone.0076162  
37.   Böck Matthias, Ogishima Soichi, Tanaka Hiroshi, et al. Hub-centered gene network reconstruction using automatic relevance determination. PloS one. 2012; 7 (5): e35077. doi:10.1371/journal.pone.0035077